Index

Symbols

3D Slicer

_

__calculate_centroids() (AortaSegmenter.AortaSegmenter method) __get_dist() (AortaSegmenter.AortaSegmenter method) __get_image_segment() (AortaSegmenter.AortaSegmenter method)

__get_new_centroids() (AortaSegmenter.AortaSegmenter method) __is_asc_reaching_heart() (AortaSegmenter.AortaSegmenter method) __prepare_label_map() (AortaSegmenter.AortaSegmenter method) __segmentation() (AortaSegmenter.AortaSegmenter method)

A

anyEmptySeed() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleLogic method) Aorta AortaGeomReconDisplayModuleLogic (class in AortaGeomReconDisplayModule) AortaGeomReconDisplayModuleWidget (class in AortaGeomReconDisplayModule) AortaGeomReconEnums module

AortaSegmenter module AortaSegmenter (class in AortaSegmenter) asc_seed (AortaSegmenter.AortaSegmenter attribute) Ascending Aorta

B

begin_segmentation() (AortaSegmenter.AortaSegmenter method)

binary dilation black_pixel (AortaGeomReconEnums.PixelValue attribute)

C

cleanup() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method) conftest module contour line

createDefaultParameters() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleLogic method) cropped_image (AortaSegmenter.AortaSegmenter attribute) Curvature scaling curvature_scaling (AortaSegmenter.AortaSegmenter attribute)

D

des_seed (AortaSegmenter.AortaSegmenter attribute) Descending Aorta

DICOM DSC() (in module test_image_preprocessing)

E

enter() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method)

Euclidean distance transform exit() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method)

G

get_cropped_volume_image() (in module test_image_preprocessing)

getPlaneIntersectionPoint() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleLogic method)

I

inferior

Inferior_to_Superior (AortaGeomReconEnums.SegmentDirection attribute) initializeParameterNode() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method)

K

kernel size

kernel_size (AortaSegmenter.AortaSegmenter attribute)

L

label map

Level sets

M

Maximum iteration mean_absolute_error() (in module test_image_preprocessing) mean_square_error() (in module test_image_preprocessing) module AortaGeomReconEnums AortaSegmenter conftest test_image_preprocessing

N

no_ite (AortaSegmenter.AortaSegmenter attribute)

num_slice_skipping (AortaSegmenter.AortaSegmenter attribute)

O

onApplyButton() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method) onConfirmWarningButton() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method) onGetVTKButton() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method) onMouseMoved() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method) onResetButton() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method)

onRevertButton() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method) onSceneEndClose() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method) onSceneStartClose() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method) onSkipButton() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method) Organ Segmentation

P

PixelValue (class in AortaGeomReconEnums) print_result() (in module test_image_preprocessing) process() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleLogic method) processing_image (AortaSegmenter.AortaSegmenter property)

Propagation scaling propagation_scaling (AortaSegmenter.AortaSegmenter attribute) pytest_addoption() (in module conftest) pytest_generate_tests() (in module conftest)

R

read_volume_image() (in module test_image_preprocessing) resetDefaultParameters() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleLogic method)

rms_error (AortaSegmenter.AortaSegmenter attribute) root_mse() (in module test_image_preprocessing)

S

saveVtk() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleLogic method) SegmentDirection (class in AortaGeomReconEnums) segmented slice setDefaultParameters() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleLogic method) setParameterNode() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method) setup() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method) showPhaseAS() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method)

showPhaseCropAorta() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method) showWarning() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method) slice Stop limit stop_limit (AortaSegmenter.AortaSegmenter attribute) stopping_slice (AortaSegmenter.AortaSegmenter property) superior Superior_to_Inferior (AortaGeomReconEnums.SegmentDirection attribute)

T

test_compare_segmentation() (in module test_image_preprocessing) test_image_preprocessing module

threshold threshold coefficient threshold_coef (AortaSegmenter.AortaSegmenter attribute) transform_image() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleLogic method)

U

updateGUIFromParameterNode() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method)

updateParameterNodeFromGUI() (AortaGeomReconDisplayModule.AortaGeomReconDisplayModuleWidget method)

W

white_pixel (AortaGeomReconEnums.PixelValue attribute)